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Slin_5063 protein (Spirosoma linguale) - STRING interaction network
"Slin_5063" - D-lactate dehydrogenase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5063D-lactate dehydrogenase (1009 aa)    
Predicted Functional Partners:
Slin_1817
FMN-dependent alpha-hydroxy acid dehydrogenase (349 aa)
   
 
  0.862
Slin_4693
L-lactate transport (589 aa)
   
   
  0.850
Slin_5036
Citrate synthase I (428 aa)
     
 
  0.816
Slin_3931
Hypothetical protein (459 aa)
 
 
  0.810
leuB
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (358 aa)
     
  0.792
Slin_4313
Isocitrate dehydrogenase (456 aa)
     
  0.792
Slin_3335
Isocitrate dehydrogenase (482 aa)
     
  0.792
Slin_3485
UbiA prenyltransferase (291 aa)
       
  0.777
Slin_0160
UbiA prenyltransferase (291 aa)
       
  0.777
Slin_6051
FAD dependent oxidoreductase (552 aa)
   
   
  0.729
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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