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Slin_5076 protein (Spirosoma linguale) - STRING interaction network
"Slin_5076" - Penicillin-binding protein 1C in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5076Penicillin-binding protein 1C (816 aa)    
Predicted Functional Partners:
Slin_5078
Alpha-2-macroglobulin (1859 aa)
   
  0.927
murG
UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) (370 aa)
       
    0.908
Slin_5077
Hypothetical protein (146 aa)
              0.646
Slin_5075
Beta-lactamase (464 aa)
              0.641
Slin_5403
Hypothetical protein (519 aa)
   
          0.421
Slin_1200
Hypothetical protein (232 aa)
   
          0.421
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation (461 aa)
   
 
      0.414
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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