STRINGSTRING
Slin_5084 protein (Spirosoma linguale) - STRING interaction network
"Slin_5084" - SMP-30/gluconolaconase/LRE domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5084SMP-30/gluconolaconase/LRE domain-containing protein (316 aa)    
Predicted Functional Partners:
Slin_0892
Hypothetical protein (327 aa)
   
          0.586
Slin_4183
GHMP kinase (347 aa)
   
          0.530
Slin_4731
Hypothetical protein (509 aa)
   
          0.507
Slin_0499
Hypothetical protein (445 aa)
   
          0.495
Slin_3438
Late embryogenesis abundant protein 2 (304 aa)
   
          0.453
katG
Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity (749 aa)
              0.430
Slin_6060
Hypothetical protein (510 aa)
   
          0.406
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (6%) [HD]