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Slin_5090 protein (Spirosoma linguale) - STRING interaction network
"Slin_5090" - TonB family protein in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5090TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (274 aa)    
Predicted Functional Partners:
Slin_5089
Biopolymertransporter ExbD/TolR (178 aa)
 
          0.964
Slin_5092
Phosphate ABC transporter substrate-binding protein (313 aa)
 
          0.954
Slin_5088
Biopolymertransporter ExbD/TolR (208 aa)
 
          0.935
Slin_5093
Hypothetical protein (590 aa)
 
          0.908
Slin_5087
MotA/TolQ/ExbB proton channel (277 aa)
 
          0.870
Slin_5091
Hypothetical protein (73 aa)
              0.859
Slin_1307
Outer membrane assembly lipoprotein YfiO (299 aa)
   
          0.685
Slin_4435
Outer membrane chaperone Skp (190 aa)
   
          0.680
Slin_2312
Hypothetical protein (526 aa)
   
          0.667
Slin_4903
Organic solvent tolerance protein OstA-like protein (1210 aa)
   
          0.659
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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