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Slin_5123 protein (Spirosoma linguale) - STRING interaction network
"Slin_5123" - Pyrrolo-quinoline quinone in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5123Pyrrolo-quinoline quinone (475 aa)    
Predicted Functional Partners:
Slin_4434
Outer membrane protein assembly complex, YaeT protein (865 aa)
     
  0.969
Slin_5122
Hypothetical protein (1005 aa)
              0.642
Slin_5124
4-alpha-glucanotransferase (525 aa)
              0.563
Slin_6077
PpiC-type peptidyl-prolyl cis-trans isomerase (133 aa)
     
 
  0.525
Slin_0807
PpiC-type peptidyl-prolyl cis-trans isomerase (797 aa)
     
 
  0.525
Slin_0806
PpiC-type peptidyl-prolyl cis-trans isomerase (458 aa)
     
 
  0.525
Slin_5121
ABC transporter (240 aa)
              0.523
der
Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis (435 aa)
   
 
  0.498
rlmN
Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs (349 aa)
   
      0.477
hisS
histidyl-tRNA synthetase (454 aa)
   
        0.454
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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