STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5142Hypothetical protein. (107 aa)    
Predicted Functional Partners:
Slin_5143
Hypothetical protein.
       0.773
Slin_5144
KEGG: hypothetical protein.
       0.619
Slin_5145
PFAM: MORN variant repeat protein; KEGG: saz:Sama_1061 hypothetical protein.
       0.618
Slin_5146
PFAM: electron transport protein SCO1/SenC; KEGG: afw:Anae109_2865 electron transport protein SCO1/SenC.
       0.618
Slin_5141
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: dat:HRM2_05770 RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
       0.516
Slin_5140
Hypothetical protein.
       0.470
Slin_5147
TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: Pdxp; pyridoxal (pyridoxine, vitamin B6) phosphatase; K07758 pyridoxal phosphatase.
       0.418
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.