STRINGSTRING
gmd protein (Spirosoma linguale) - STRING interaction network
"gmd" - GDP-mannose 4,6-dehydratase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmdGDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose (370 aa)    
Predicted Functional Partners:
fcl
NAD-dependent epimerase/dehydratase; Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction (313 aa)
 
  0.995
Slin_5196
Mannose-1-phosphate guanylyltransferase (361 aa)
 
 
  0.964
Slin_6293
Group 1 glycosyl transferase (423 aa)
 
   
  0.680
Slin_6383
Thioredoxin (101 aa)
     
      0.671
Slin_0530
Thioredoxin (114 aa)
     
      0.671
Slin_5154
Sporulation domain-containing protein (193 aa)
              0.658
Slin_6419
NAD-dependent epimerase/dehydratase (322 aa)
   
 
  0.596
Slin_6411
NAD-dependent epimerase/dehydratase (357 aa)
   
 
  0.596
Slin_6291
NAD-dependent epimerase/dehydratase (357 aa)
   
 
  0.596
Slin_5684
Epimerase (276 aa)
   
 
  0.596
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (10%) [HD]