STRINGSTRING
Slin_5157 protein (Spirosoma linguale) - STRING interaction network
"Slin_5157" - Short-chain dehydrogenase/reductase SDR in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5157Short-chain dehydrogenase/reductase SDR (224 aa)    
Predicted Functional Partners:
Slin_5818
Short-chain dehydrogenase/reductase SDR (260 aa)
   
          0.762
Slin_3678
Short-chain dehydrogenase/reductase SDR (241 aa)
   
          0.732
Slin_3152
Short-chain dehydrogenase/reductase SDR (250 aa)
   
          0.732
Slin_2192
Short-chain dehydrogenase/reductase SDR (256 aa)
   
          0.715
Slin_1007
Short-chain dehydrogenase/reductase SDR (233 aa)
   
          0.703
Slin_5156
ROK family protein (304 aa)
 
          0.674
Slin_0199
Short-chain dehydrogenase/reductase SDR (237 aa)
   
          0.641
Slin_5981
Hypothetical protein (298 aa)
   
          0.640
Slin_5846
Short-chain dehydrogenase/reductase SDR (262 aa)
   
          0.634
Slin_5158
Hypothetical protein (243 aa)
              0.615
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (8%) [HD]