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Slin_5159 protein (Spirosoma linguale) - STRING interaction network
"Slin_5159" - ABC transporter in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5159ABC transporter (248 aa)    
Predicted Functional Partners:
Slin_5158
Hypothetical protein (243 aa)
 
 
  0.995
Slin_1812
Hypothetical protein (271 aa)
 
 
  0.988
Slin_4901
Hypothetical protein (328 aa)
 
 
    0.885
Slin_1810
Hypothetical protein (341 aa)
       
    0.859
Slin_1811
ABC transporter (251 aa)
   
   
 
0.821
Slin_1196
ABC transporter (243 aa)
 
   
 
0.707
Slin_6496
ABC transporter (208 aa)
 
        0.620
tsaD
Glycoprotease family metalloendopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction (332 aa)
   
        0.593
cysS
cysteinyl-tRNA synthetase (499 aa)
        0.587
Slin_1762
ABC transporter (218 aa)
   
 
 
0.521
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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