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Slin_5173 protein (Spirosoma linguale) - STRING interaction network
"Slin_5173" - MerR family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5173MerR family transcriptional regulator (291 aa)    
Predicted Functional Partners:
Slin_1923
Hypothetical protein (218 aa)
   
          0.694
Slin_5959
Squalene/phytoene synthase (278 aa)
 
          0.646
Slin_5960
Phytoene desaturase (490 aa)
 
          0.628
Slin_5702
Fatty acid hydroxylase (158 aa)
 
     
  0.595
Slin_5172
Beta-lactamase (466 aa)
 
          0.588
Slin_0447
Lycopene beta and epsilon cyclase (393 aa)
 
          0.540
Slin_2797
Hypothetical protein (1343 aa)
   
          0.536
Slin_3072
anti-sigma-K factor RskA (274 aa)
   
          0.496
Slin_0654
Amine oxidase (438 aa)
 
          0.487
Slin_3996
Secretion protein HlyD (450 aa)
   
          0.445
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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