STRINGSTRING
Slin_5213 protein (Spirosoma linguale) - STRING interaction network
"Slin_5213" - TonB-dependent receptor plug in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5213TonB-dependent receptor plug (831 aa)    
Predicted Functional Partners:
Slin_5212
Hypothetical protein (283 aa)
              0.750
Slin_1274
TonB-dependent receptor plug (1066 aa)
   
          0.703
Slin_3859
Polysaccharide biosynthesis protein (461 aa)
   
          0.661
Slin_0577
Hypothetical protein (422 aa)
   
          0.631
Slin_2981
TonB-dependent receptor plug (816 aa)
   
          0.623
Slin_4699
TonB-dependent receptor plug (799 aa)
   
          0.610
Slin_2860
Hypothetical protein (168 aa)
   
          0.605
Slin_0793
Hypothetical protein (420 aa)
   
          0.604
Slin_4381
TonB-dependent receptor (1071 aa)
   
          0.596
Slin_0106
TonB-dependent receptor plug (1161 aa)
   
          0.587
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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