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Slin_5230 protein (Spirosoma linguale) - STRING interaction network
"Slin_5230" - PKD domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5230PKD domain-containing protein (1222 aa)    
Predicted Functional Partners:
Slin_5231
Hypothetical protein (343 aa)
 
          0.861
Slin_2543
Hypothetical protein (607 aa)
   
          0.777
Slin_5097
Hypothetical protein (727 aa)
   
          0.776
Slin_6608
Transcriptional regulator (753 aa)
   
          0.772
Slin_5393
Hypothetical protein (1303 aa)
   
          0.769
Slin_2039
Hypothetical protein (558 aa)
   
          0.767
Slin_5627
Anthranilate phosphoribosyltransferase-like protein (419 aa)
   
          0.764
Slin_3219
Hypothetical protein (749 aa)
   
          0.763
Slin_2001
Hypothetical protein (500 aa)
   
          0.759
Slin_5025
Crp/Fnr family transcriptional regulator (1056 aa)
   
          0.755
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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