STRINGSTRING
Slin_5242 protein (Spirosoma linguale) - STRING interaction network
"Slin_5242" - Inositol oxygenase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5242Inositol oxygenase (284 aa)    
Predicted Functional Partners:
Slin_4183
GHMP kinase (347 aa)
   
 
    0.919
Slin_3755
Inositol monophosphatase (269 aa)
     
 
    0.901
Slin_2273
Inositol monophosphatase (266 aa)
     
 
    0.901
Slin_4786
Glucuronate isomerase (477 aa)
       
    0.806
Slin_1060
Glucuronate isomerase (470 aa)
       
    0.806
Slin_2419
Beta-galactosidase (686 aa)
         
    0.800
Slin_5241
Hypothetical protein (107 aa)
              0.681
Slin_4982
Fatty acid desaturase (343 aa)
   
        0.677
Slin_6192
Demethylmenaquinone methyltransferase-like protein (314 aa)
   
          0.677
Slin_0535
NIPSNAP family containing protein (267 aa)
   
          0.648
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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