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Slin_5287 protein (Spirosoma linguale) - STRING interaction network
"Slin_5287" - TonB-dependent receptor in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5287TonB-dependent receptor (933 aa)    
Predicted Functional Partners:
Slin_0380
Hypothetical protein (588 aa)
   
          0.661
Slin_4942
Aminopeptidase (689 aa)
   
          0.615
Slin_2763
anti-FecI sigma factor FecR (381 aa)
 
          0.612
Slin_6549
Peptidase M28 (551 aa)
   
          0.610
Slin_2076
Hypothetical protein (1074 aa)
   
          0.597
Slin_1085
Peptidase S9B dipeptidylpeptidase IV domain-containing protein (718 aa)
   
          0.592
Slin_3389
anti-FecI sigma factor FecR (355 aa)
 
          0.588
Slin_6185
Peptidase S9B dipeptidylpeptidase IV domain-containing protein (733 aa)
   
          0.588
Slin_4504
Peptidase S9B dipeptidylpeptidase IV domain-containing protein (739 aa)
   
          0.580
Slin_4980
anti-FecI sigma factor FecR (342 aa)
 
          0.547
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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