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Slin_5326 protein (Spirosoma linguale) - STRING interaction network
"Slin_5326" - XRE family transcriptional regulator in Spirosoma linguale
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5326XRE family transcriptional regulator (68 aa)    
Predicted Functional Partners:
Slin_5327
Hypothetical protein (89 aa)
              0.625
Slin_5325
Hypothetical protein (127 aa)
              0.524
atpH
ATP synthase F1 subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (179 aa)
       
      0.511
Slin_4981
ECF subfamily RNA polymerase sigma-24 subunit (193 aa)
 
 
 
  0.423
Slin_5859
AMP-dependent synthetase and ligase (567 aa)
         
  0.400
Slin_2999
AMP-dependent synthetase and ligase (563 aa)
         
  0.400
Slin_1750
O-succinylbenzoic acid--CoA ligase (364 aa)
         
  0.400
Slin_1560
AMP-dependent synthetase and ligase (606 aa)
         
  0.400
Slin_1553
AMP-dependent synthetase and ligase (495 aa)
         
  0.400
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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