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Slin_5340 protein (Spirosoma linguale) - STRING interaction network
"Slin_5340" - TonB-dependent receptor plug in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5340TonB-dependent receptor plug (814 aa)    
Predicted Functional Partners:
Slin_5341
Hypothetical protein (300 aa)
 
          0.922
Slin_3585
Hypothetical protein (324 aa)
   
          0.768
Slin_1159
Hypothetical protein (144 aa)
   
          0.727
Slin_3583
Hypothetical protein (313 aa)
   
          0.723
Slin_3226
Hypothetical protein (324 aa)
   
          0.715
Slin_5203
OmpA/MotB domain-containing protein (668 aa)
   
          0.708
Slin_1311
OmpA/MotB domain-containing protein (757 aa)
   
          0.691
Slin_3584
OmpA/MotB domain-containing protein (798 aa)
   
          0.675
Slin_4945
OmpA/MotB domain-containing protein (813 aa)
   
          0.667
Slin_3022
Hypothetical protein (174 aa)
   
          0.657
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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