STRINGSTRING
Slin_5372 protein (Spirosoma linguale) - STRING interaction network
"Slin_5372" - Antibiotic biosynthesis monooxygenase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5372Antibiotic biosynthesis monooxygenase (123 aa)    
Predicted Functional Partners:
Slin_5373
NmrA family protein (304 aa)
              0.731
Slin_5371
AraC family transcriptional regulator (326 aa)
              0.608
Slin_5370
Hypothetical protein (36 aa)
              0.608
Slin_5369
NAD-dependent epimerase/dehydratase (474 aa)
              0.464
Slin_3673
Signal peptide protein (255 aa)
   
          0.456
Slin_2186
Short-chain dehydrogenase/reductase SDR (248 aa)
   
          0.440
Slin_5227
Hypothetical protein (313 aa)
   
          0.423
Slin_2504
Short-chain dehydrogenase/reductase SDR (285 aa)
   
          0.421
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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