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Slin_5409 protein (Spirosoma linguale) - STRING interaction network
"Slin_5409" - LuxR family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5409LuxR family transcriptional regulator (223 aa)    
Predicted Functional Partners:
Slin_5408
Histidine kinase (494 aa)
 
 
  0.985
Slin_6439
Histidine kinase (657 aa)
 
 
  0.926
Slin_6208
Histidine kinase (657 aa)
 
 
  0.922
Slin_6528
Histidine kinase (592 aa)
 
 
  0.904
Slin_5844
Histidine kinase (270 aa)
 
 
  0.904
Slin_0699
Histidine kinase (526 aa)
 
 
  0.904
Slin_6490
ATP-binding protein (636 aa)
 
 
  0.903
Slin_6033
Histidine kinase (726 aa)
 
 
  0.903
Slin_5256
Histidine kinase (1063 aa)
 
 
  0.867
Slin_5407
Nitrite reductase (NAD(P)H) small subunit (117 aa)
   
        0.811
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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