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Slin_5414 protein (Spirosoma linguale) - STRING interaction network
"Slin_5414" - AraC family transcriptional regulator in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5414AraC family transcriptional regulator (296 aa)    
Predicted Functional Partners:
Slin_5413
Short-chain dehydrogenase/reductase SDR (245 aa)
 
          0.705
Slin_4136
AraC family transcriptional regulator (278 aa)
   
          0.635
Slin_5415
Glucosamine-6-phosphate isomerase (657 aa)
              0.602
Slin_2199
AraC family transcriptional regulator (264 aa)
   
          0.562
Slin_1480
AraC family transcriptional regulator (288 aa)
   
          0.488
Slin_4231
Lantibiotic dehydratase domain-containing protein (962 aa)
   
          0.479
Slin_4870
LysR family transcriptional regulator (298 aa)
   
   
  0.441
Slin_4312
LysR family transcriptional regulator (307 aa)
   
   
  0.441
Slin_2203
AraC family transcriptional regulator (285 aa)
   
          0.435
Slin_4043
AraC family transcriptional regulator (303 aa)
   
          0.434
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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