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Slin_5417 protein (Spirosoma linguale) - STRING interaction network
"Slin_5417" - ECF subfamily RNA polymerase sigma-24 subunit in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5417ECF subfamily RNA polymerase sigma-24 subunit (192 aa)    
Predicted Functional Partners:
Slin_5418
anti-FecI sigma factor FecR (368 aa)
 
          0.818
Slin_5419
TonB-dependent receptor plug (1102 aa)
 
          0.672
Slin_5420
RagB/SusD domain-containing protein (575 aa)
 
          0.610
Slin_0869
RagB/SusD domain-containing protein (503 aa)
   
          0.544
Slin_3951
RagB/SusD domain-containing protein (491 aa)
 
          0.537
Slin_4318
RagB/SusD domain-containing protein (481 aa)
   
          0.526
Slin_0868
TonB-dependent receptor plug (1117 aa)
   
          0.510
Slin_6568
RagB/SusD domain-containing protein (502 aa)
   
          0.497
Slin_4380
RagB/SusD domain-containing protein (478 aa)
   
          0.488
Slin_4041
RagB/SusD domain-containing protein (477 aa)
   
          0.487
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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