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Slin_5431 protein (Spirosoma linguale) - STRING interaction network
"Slin_5431" - Peptide deformylase in Spirosoma linguale
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
Slin_5431Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (190 aa)    
Predicted Functional Partners:
fmt
methionyl-tRNA formyltransferase; Modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by- (I) promoting its recognition by IF2 and (II) impairing its binding to EFTu-GTP (312 aa)
 
  0.964
Slin_4052
Mg chelatase subunit ChlI (513 aa)
          0.875
rplQ
50S ribosomal protein L17 (204 aa)
   
 
  0.875
clpP
Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (229 aa)
 
   
  0.853
clpX
Sigma 54 interacting domain-containing protein; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP (410 aa)
   
 
  0.719
Slin_5430
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5’-end of pre-16S rRNA (142 aa)
              0.714
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA (301 aa)
 
   
  0.705
prfB
Hypothetical protein; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA (358 aa)
 
      0.698
Slin_2588
Formyl transferase (254 aa)
 
 
  0.673
Slin_5432
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (273 aa)
   
        0.659
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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