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Slin_5439 protein (Spirosoma linguale) - STRING interaction network
"Slin_5439" - TonB-dependent receptor plug in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5439TonB-dependent receptor plug (962 aa)    
Predicted Functional Partners:
Slin_5438
Cell surface receptor IPT/TIG domain-containing protein (561 aa)
 
     
  0.953
Slin_4371
Cell surface receptor IPT/TIG domain-containing protein (561 aa)
 
     
  0.852
Slin_6577
Thiamine monophosphate synthase (201 aa)
   
          0.630
Slin_3291
Integrase family protein (450 aa)
   
          0.547
Slin_0068
PAS/PAC sensor signal transduction histidine kinase (604 aa)
 
     
  0.545
Slin_1134
Periplasmic binding protein (246 aa)
   
   
  0.515
Slin_6549
Peptidase M28 (551 aa)
   
          0.498
Slin_1565
Transporter permease (355 aa)
   
   
  0.490
Slin_5737
Peptidase S46 (711 aa)
   
          0.478
Slin_5938
MotA/TolQ/ExbB proton channel (236 aa)
   
   
  0.457
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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