STRINGSTRING
Slin_5444 protein (Spirosoma linguale) - STRING interaction network
"Slin_5444" - Peptidase S13 D-Ala-D-Ala carboxypeptidase C in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5444Peptidase S13 D-Ala-D-Ala carboxypeptidase C (400 aa)    
Predicted Functional Partners:
Slin_2717
D-alanyl-D-alaninecarboxypeptidase/ D-alanyl-D-alanine-endopeptidase (514 aa)
   
   
    0.937
murG
UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) (370 aa)
         
  0.901
Slin_5445
FG-GAP repeat-containing protein (1203 aa)
 
          0.745
Slin_0505
Hypothetical protein (224 aa)
   
          0.583
Slin_0771
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD (229 aa)
 
          0.535
Slin_6350
Class I and II aminotransferase (360 aa)
 
          0.527
Slin_5410
Hypothetical protein (385 aa)
 
        0.523
Slin_4885
Rieske (2Fe-2S) domain-containing protein (172 aa)
   
          0.516
Slin_2512
Hypothetical protein (343 aa)
   
          0.483
Slin_5797
RagB/SusD domain-containing protein (601 aa)
 
          0.472
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (9%) [HD]