STRINGSTRING
Slin_5471 protein (Spirosoma linguale) - STRING interaction network
"Slin_5471" - Alpha/beta hydrolase fold protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5471Alpha/beta hydrolase fold protein (255 aa)    
Predicted Functional Partners:
Slin_5468
Hypothetical protein (210 aa)
          0.924
Slin_5470
Glycoside hydrolase family protein (446 aa)
              0.859
Slin_5469
Gluconate 2-dehydrogenase (acceptor) (526 aa)
 
 
 
  0.849
Slin_3601
Alpha/beta hydrolase fold protein (264 aa)
   
          0.686
Slin_1152
Alpha/beta hydrolase fold protein (239 aa)
   
          0.649
Slin_0656
Alpha/beta hydrolase fold protein (258 aa)
   
          0.608
menD
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylic acid synthase/2-oxoglutarate decarboxylase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) (582 aa)
   
   
  0.574
Slin_5467
Short-chain dehydrogenase/reductase SDR (305 aa)
         
  0.564
Slin_6350
Class I and II aminotransferase (360 aa)
   
 
  0.531
Slin_5561
8-amino-7-oxononanoate synthase (395 aa)
   
 
  0.531
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (16%) [HD]