STRINGSTRING
Slin_5488 protein (Spirosoma linguale) - STRING interaction network
"Slin_5488" - Xylose isomerase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5488Xylose isomerase (285 aa)    
Predicted Functional Partners:
Slin_5622
Acetyl xylan esterase (407 aa)
 
          0.781
Slin_5487
Dehydrogenase (1023 aa)
 
          0.700
Slin_1264
Xylose isomerase (274 aa)
   
          0.695
Slin_6336
Hypothetical protein (462 aa)
 
          0.685
Slin_2121
Hypothetical protein (1837 aa)
   
          0.661
Slin_6214
Oxidoreductase domain-containing protein (340 aa)
   
          0.648
Slin_2229
Acetyl xylan esterase (441 aa)
   
          0.645
Slin_3952
Hypothetical protein (327 aa)
   
          0.626
Slin_0604
Oxidoreductase domain-containing protein (327 aa)
   
          0.621
Slin_1808
BNR/Asp-box repeat domain-containing protein (348 aa)
 
          0.620
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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