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Slin_5489 protein (Spirosoma linguale) - STRING interaction network
"Slin_5489" - ECF subfamily RNA polymerase sigma-24 subunit in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5489ECF subfamily RNA polymerase sigma-24 subunit (189 aa)    
Predicted Functional Partners:
Slin_5490
Hypothetical protein (528 aa)
              0.826
Slin_5491
Hypothetical protein (159 aa)
              0.792
Slin_4167
ECF subfamily RNA polymerase sigma-24 subunit (182 aa)
   
          0.775
Slin_6123
ECF subfamily RNA polymerase sigma-24 subunit (187 aa)
   
          0.770
Slin_6609
ECF subfamily RNA polymerase sigma-24 subunit (180 aa)
   
          0.765
Slin_5961
ECF subfamily RNA polymerase sigma-24 subunit (171 aa)
   
          0.750
Slin_5492
Proteinase inhibitor I4 serpin (412 aa)
              0.628
Slin_5657
ECF subfamily RNA polymerase sigma-24 subunit (194 aa)
   
          0.591
Slin_6285
anti-FecI sigma factor FecR (333 aa)
   
 
  0.570
Slin_5656
anti-FecI sigma factor FecR (332 aa)
   
 
  0.570
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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