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Slin_5500 protein (Spirosoma linguale) - STRING interaction network
"Slin_5500" - Dienelactone hydrolase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5500Dienelactone hydrolase (292 aa)    
Predicted Functional Partners:
Slin_1487
Carboxymethylenebutenolidase (295 aa)
   
   
 
0.820
Slin_5502
Hypothetical protein (444 aa)
              0.550
Slin_5501
Metallophosphoesterase (426 aa)
              0.550
Slin_4544
Hypothetical protein (372 aa)
   
          0.549
Slin_5499
Hypothetical protein (148 aa)
              0.531
Slin_3875
Urease accessory protein (208 aa)
   
          0.499
Slin_6631
Fatty acid desaturase (361 aa)
   
          0.415
Slin_5503
Hypothetical protein (264 aa)
              0.414
Slin_5498
Hypothetical protein (105 aa)
              0.410
Slin_1776
Hypothetical protein (245 aa)
   
          0.406
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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