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Slin_5515 protein (Spirosoma linguale) - STRING interaction network
"Slin_5515" - Gliding motility-associated lipoprotein GldJ in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5515Gliding motility-associated lipoprotein GldJ (420 aa)    
Predicted Functional Partners:
Slin_3223
Gliding motility-associated protein GldM (528 aa)
   
     
  0.797
Slin_4895
Gliding motility-associated lipoprotein GldD (195 aa)
   
     
  0.793
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site (1126 aa)
 
          0.782
Slin_3224
Gliding motility-associated protein GldL (272 aa)
   
     
  0.775
Slin_4405
Hypothetical protein (334 aa)
   
          0.768
Slin_3063
Hypothetical protein (288 aa)
   
          0.767
Slin_3219
Hypothetical protein (749 aa)
   
     
  0.761
Slin_5539
Hypothetical protein (329 aa)
   
     
  0.756
Slin_6621
Hypothetical protein (2541 aa)
   
     
  0.755
Slin_4905
Gliding-associated ABC transporter substrate-binding protein GldG (555 aa)
   
     
  0.750
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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