STRINGSTRING
Slin_5516 protein (Spirosoma linguale) - STRING interaction network
"Slin_5516" - Phosphoribosyltransferase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5516Phosphoribosyltransferase (239 aa)    
Predicted Functional Partners:
Slin_5877
Hypothetical protein (117 aa)
 
        0.811
Slin_2383
DNA protecting protein DprA (370 aa)
 
 
  0.796
Slin_4052
Mg chelatase subunit ChlI (513 aa)
 
   
  0.791
Slin_1920
ComEC/Rec2-like protein (708 aa)
 
   
  0.743
Slin_5517
Hypothetical protein (117 aa)
              0.670
Slin_5518
Chromosome segregation ATPase (1100 aa)
              0.620
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (685 aa)
   
        0.601
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity (886 aa)
 
          0.571
Slin_1618
Aminodeoxychorismate lyase (345 aa)
   
      0.543
Slin_0322
Hypothetical protein (295 aa)
 
          0.535
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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