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Slin_5527 protein (Spirosoma linguale) - STRING interaction network
"Slin_5527" - Orn/DAP/Arg decarboxylase 2 in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5527Orn/DAP/Arg decarboxylase 2 (494 aa)    
Predicted Functional Partners:
Slin_0810
Agmatine deiminase (353 aa)
       
  0.946
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (257 aa)
         
    0.900
argH
Argininosuccinate lyase (445 aa)
         
  0.807
Slin_0192
Arginine deiminase (501 aa)
       
    0.802
Slin_3616
Hypothetical protein (359 aa)
   
          0.773
Slin_1344
Hypothetical protein (355 aa)
   
          0.771
rpmH
50S ribosomal protein L34 (55 aa)
     
      0.739
Slin_4280
Hypothetical protein (108 aa)
   
          0.708
Slin_5517
Hypothetical protein (117 aa)
   
          0.688
Slin_6388
Hypothetical protein (73 aa)
   
          0.632
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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