STRINGSTRING
Slin_5592 protein (Spirosoma linguale) - STRING interaction network
"Slin_5592" - DNA-formamidopyrimidine glycosylase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5592DNA-formamidopyrimidine glycosylase (271 aa)    
Predicted Functional Partners:
Slin_0543
DNA polymerase I (1024 aa)
   
   
  0.775
Slin_5983
A/G-specific adenine glycosylase (362 aa)
   
 
  0.659
Slin_2923
Ribose-phosphate pyrophosphokinase (313 aa)
     
 
  0.653
Slin_0531
DNA polymerase III subunit alpha (1205 aa)
     
 
  0.650
Slin_5591
Pirin (286 aa)
              0.650
ftsY
Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) (318 aa)
 
 
  0.640
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3’- to 5’- polarity. Unwinds branched duplex DNA (Y-DNA) (702 aa)
   
   
  0.621
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4’- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate (157 aa)
   
   
  0.618
Slin_5596
ABC transporter (232 aa)
         
  0.615
Slin_5595
Hypothetical protein (241 aa)
              0.562
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (8%) [HD]