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Slin_5600 protein (Spirosoma linguale) - STRING interaction network
"Slin_5600" - OmpA/MotB domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5600OmpA/MotB domain-containing protein (537 aa)    
Predicted Functional Partners:
Slin_1912
Periplasmic component of the Tol biopolymer transport system-like protein (512 aa)
   
 
  0.746
Slin_3223
Gliding motility-associated protein GldM (528 aa)
   
          0.721
Slin_3219
Hypothetical protein (749 aa)
   
          0.692
Slin_6385
Hypothetical protein (694 aa)
   
          0.665
Slin_0999
Hypothetical protein (402 aa)
   
 
  0.651
Slin_5601
UvrD/REP helicase (764 aa)
              0.651
Slin_2001
Hypothetical protein (500 aa)
   
          0.648
Slin_5122
Hypothetical protein (1005 aa)
   
          0.646
Slin_2013
Hypothetical protein (597 aa)
   
          0.633
Slin_5110
Hypothetical protein (311 aa)
   
          0.630
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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