STRINGSTRING
Slin_5606 protein (Spirosoma linguale) - STRING interaction network
"Slin_5606" - Spermine synthase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5606Spermine synthase (758 aa)    
Predicted Functional Partners:
Slin_4047
Hypothetical protein (370 aa)
   
          0.564
Slin_5605
Hypothetical protein (361 aa)
              0.498
Slin_5604
Hypothetical protein (210 aa)
              0.498
Slin_2122
Hypothetical protein (892 aa)
   
          0.494
Slin_4061
Hypothetical protein (1351 aa)
   
          0.484
Slin_2655
Two component signal transduction response regulator (128 aa)
   
          0.481
Slin_0184
Hypothetical protein (917 aa)
   
          0.455
Slin_3790
Hypothetical protein (312 aa)
   
          0.445
Slin_4168
Glyceraldehyde-3-phosphate dehydrogenase (333 aa)
   
          0.414
Slin_5713
Peptidase S41; Degrades oligopeptides (1097 aa)
   
          0.401
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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