STRINGSTRING
Slin_5642 protein (Spirosoma linguale) - STRING interaction network
"Slin_5642" - AraC family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5642AraC family transcriptional regulator (308 aa)    
Predicted Functional Partners:
Slin_5122
Hypothetical protein (1005 aa)
   
          0.764
Slin_0229
Hypothetical protein (963 aa)
   
          0.747
Slin_0230
Hypothetical protein (969 aa)
   
          0.741
Slin_4518
Hypothetical protein (451 aa)
   
          0.737
Slin_3223
Gliding motility-associated protein GldM (528 aa)
   
          0.716
Slin_0566
Hypothetical protein (1086 aa)
   
          0.714
Slin_2797
Hypothetical protein (1343 aa)
   
          0.712
Slin_2018
Hypothetical protein (686 aa)
   
          0.709
Slin_4737
Hypothetical protein (131 aa)
   
          0.696
Slin_2013
Hypothetical protein (597 aa)
   
          0.691
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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