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Slin_5644 protein (Spirosoma linguale) - STRING interaction network
"Slin_5644" - Geranylgeranylglyceryl phosphate synthase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5644Geranylgeranylglyceryl phosphate synthase (249 aa)    
Predicted Functional Partners:
Slin_5645
Hypothetical protein (178 aa)
              0.859
Slin_5643
Hypothetical protein (145 aa)
              0.859
Slin_3485
UbiA prenyltransferase (291 aa)
 
     
  0.807
Slin_5852
Hypothetical protein (623 aa)
   
          0.768
Slin_4080
Family 2 glycosyl transferase (401 aa)
   
          0.766
Slin_0807
PpiC-type peptidyl-prolyl cis-trans isomerase (797 aa)
   
          0.685
Slin_5949
Hypothetical protein (1152 aa)
 
          0.681
Slin_2238
Family 2 glycosyl transferase (374 aa)
   
          0.664
Slin_2239
Hypothetical protein (333 aa)
   
          0.650
Slin_0248
O-methyltransferase-like protein (259 aa)
   
          0.646
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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