STRINGSTRING
Slin_5684 protein (Spirosoma linguale) - STRING interaction network
"Slin_5684" - Epimerase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5684Epimerase (276 aa)    
Predicted Functional Partners:
Slin_5683
Hypothetical protein (330 aa)
              0.859
Slin_5682
Hypothetical protein (307 aa)
              0.756
Slin_5681
ECF subfamily RNA polymerase sigma-24 subunit (199 aa)
              0.756
Slin_6307
Capsular exopolysaccharide family protein (772 aa)
   
 
  0.706
Slin_4070
Oxidoreductase domain-containing protein (734 aa)
   
   
  0.655
Slin_5959
Squalene/phytoene synthase (278 aa)
   
 
  0.655
Slin_6090
Hypothetical protein (398 aa)
 
   
  0.652
Slin_5680
Hypothetical protein (125 aa)
 
          0.625
Slin_4077
Nucleotide sugar dehydrogenase (444 aa)
   
 
  0.619
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose (370 aa)
   
 
  0.596
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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