STRINGSTRING
Slin_5741 protein (Spirosoma linguale) - STRING interaction network
"Slin_5741" - NUDIX hydrolase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5741NUDIX hydrolase (226 aa)    
Predicted Functional Partners:
Slin_5742
Cytosine deaminase (144 aa)
              0.805
Slin_2001
Hypothetical protein (500 aa)
   
          0.725
Slin_5097
Hypothetical protein (727 aa)
   
          0.699
Slin_2543
Hypothetical protein (607 aa)
   
          0.657
Slin_3132
VRR-NUC domain-containing protein (578 aa)
   
          0.626
Slin_4769
Stress responsive alpha-beta barrel domain-containing protein (135 aa)
   
          0.623
Slin_5096
Hypothetical protein (989 aa)
   
          0.606
Slin_3312
Multi-sensor hybrid histidine kinase (1226 aa)
   
          0.568
Slin_2257
Hypothetical protein (831 aa)
   
          0.565
Slin_1108
D-alanine--D-alanine ligase; Cell wall formation (551 aa)
   
          0.563
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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