STRINGSTRING
Slin_5745 protein (Spirosoma linguale) - STRING interaction network
"Slin_5745" - Rhomboid family protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5745Rhomboid family protein (207 aa)    
Predicted Functional Partners:
Slin_5744
Dimethylallyltranstransferase (323 aa)
   
        0.720
Slin_5746
Response regulator receiver protein (298 aa)
              0.664
Slin_2319
Glutamate synthase (1524 aa)
     
   
  0.663
Slin_5568
Rhomboid family protein (259 aa)
   
          0.659
Slin_0657
Hypothetical protein (222 aa)
   
          0.650
Slin_5567
Rhomboid family protein (308 aa)
 
          0.602
Slin_4914
Transketolase (801 aa)
     
        0.522
Slin_5743
Hypothetical protein (238 aa)
              0.499
Slin_3827
Hypothetical protein (292 aa)
   
      0.498
rnz
Beta-lactamase; Zinc phosphodiesterase, which displays some tRNA 3’- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3’-trailer from precursor tRNA (320 aa)
   
      0.498
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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