STRINGSTRING
Slin_5793 protein (Spirosoma linguale) - STRING interaction network
"Slin_5793" - TonB-dependent receptor plug in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5793TonB-dependent receptor plug (626 aa)    
Predicted Functional Partners:
Slin_5794
Hypothetical protein (351 aa)
 
          0.971
Slin_5795
ATP-binding protein (244 aa)
 
          0.885
Slin_6611
TonB-dependent receptor plug (1137 aa)
   
          0.708
Slin_2001
Hypothetical protein (500 aa)
   
          0.705
Slin_5235
Hypothetical protein (425 aa)
   
          0.704
Slin_5122
Hypothetical protein (1005 aa)
   
          0.688
Slin_2013
Hypothetical protein (597 aa)
   
          0.687
Slin_4518
Hypothetical protein (451 aa)
   
          0.683
Slin_6612
Hypothetical protein (546 aa)
   
          0.679
Slin_5683
Hypothetical protein (330 aa)
   
          0.670
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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