STRINGSTRING
Slin_5798 protein (Spirosoma linguale) - STRING interaction network
"Slin_5798" - TonB-dependent receptor plug in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5798TonB-dependent receptor plug (1202 aa)    
Predicted Functional Partners:
Slin_5797
RagB/SusD domain-containing protein (601 aa)
 
          0.950
Slin_0276
RagB/SusD domain-containing protein (582 aa)
   
          0.778
Slin_0273
RagB/SusD domain-containing protein (582 aa)
 
          0.777
Slin_2992
RagB/SusD domain-containing protein (576 aa)
   
          0.777
Slin_1910
RagB/SusD domain-containing protein (594 aa)
   
          0.776
Slin_2473
RagB/SusD domain-containing protein (615 aa)
   
          0.775
Slin_2475
RagB/SusD domain-containing protein (623 aa)
   
          0.773
Slin_6635
RagB/SusD domain-containing protein (483 aa)
   
          0.761
Slin_4209
RagB/SusD domain-containing protein (456 aa)
   
          0.759
Slin_6287
RagB/SusD domain-containing protein (531 aa)
   
          0.757
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (9%) [HD]