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Slin_5800 protein (Spirosoma linguale) - STRING interaction network
"Slin_5800" - ECF subfamily RNA polymerase sigma-24 subunit in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5800ECF subfamily RNA polymerase sigma-24 subunit (201 aa)    
Predicted Functional Partners:
Slin_5799
anti-FecI sigma factor FecR (368 aa)
 
          0.720
Slin_4980
anti-FecI sigma factor FecR (342 aa)
   
          0.543
Slin_6566
anti-FecI sigma factor FecR (362 aa)
   
          0.493
Slin_1426
anti-FecI sigma factor FecR (361 aa)
   
          0.466
Slin_4781
anti-FecI sigma factor FecR (345 aa)
   
          0.450
Slin_3389
anti-FecI sigma factor FecR (355 aa)
   
          0.434
Slin_5418
anti-FecI sigma factor FecR (368 aa)
   
          0.421
Slin_6297
Group 1 glycosyl transferase (400 aa)
   
          0.410
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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