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Slin_5825 protein (Spirosoma linguale) - STRING interaction network
"Slin_5825" - SMC domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5825SMC domain-containing protein (369 aa)    
Predicted Functional Partners:
Slin_5826
Hypothetical protein (188 aa)
              0.859
Slin_4612
Hypothetical protein (217 aa)
 
          0.810
Slin_5824
Peptidase M1 membrane alanine aminopeptidase (551 aa)
              0.606
Slin_5823
methylmalonyl-CoA epimerase (135 aa)
              0.590
Slin_4849
Hypothetical protein (675 aa)
 
          0.549
Slin_4847
Restriction enzyme (1219 aa)
 
          0.471
Slin_4844
Hypothetical protein (1186 aa)
 
          0.448
Slin_5822
Iron-sulfur cluster assembly accessory protein (108 aa)
              0.431
Slin_6482
Virulence protein SrfB (1048 aa)
   
          0.400
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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