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Slin_5840 protein (Spirosoma linguale) - STRING interaction network
"Slin_5840" - dTDP-glucose 4,6-dehydratase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5840dTDP-glucose 4,6-dehydratase (352 aa)    
Predicted Functional Partners:
Slin_0434
dTDP-4-dehydrorhamnose 3,5-epimerase (181 aa)
 
  0.997
Slin_5841
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis (286 aa)
 
  0.996
Slin_4813
dTDP-4-dehydrorhamnose 3,5-epimerase (173 aa)
 
 
  0.965
Slin_4815
dTDP-4-dehydrorhamnose reductase (299 aa)
 
 
0.941
Slin_3525
NAD-dependent epimerase/dehydratase (326 aa)
   
 
0.881
Slin_5839
UDP-glucose 4-epimerase (343 aa)
 
   
0.791
Slin_3852
Family 2 glycosyl transferase (321 aa)
 
     
  0.779
Slin_5047
Family 2 glycosyl transferase (315 aa)
 
     
  0.768
Slin_6387
Family 2 glycosyl transferase (340 aa)
 
     
  0.739
Slin_0721
Family 2 glycosyl transferase (297 aa)
 
     
  0.657
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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