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rnr protein (Spirosoma linguale) - STRING interaction network
"rnr" - Ribonuclease R in Spirosoma linguale
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Cooccurence
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[Homology]
Score
rnrRibonuclease R; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (825 aa)    
Predicted Functional Partners:
Slin_1646
NUDIX hydrolase (178 aa)
   
  0.952
Slin_1022
NUDIX hydrolase (208 aa)
   
  0.952
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] (153 aa)
       
  0.901
Slin_1134
Periplasmic binding protein (246 aa)
     
      0.866
Slin_0993
tRNA/rRNA methyltransferase SpoU (248 aa)
 
    0.816
Slin_3136
TrmH family RNA methyltransferase (276 aa)
 
    0.808
Slin_0514
tRNA/rRNA methyltransferase SpoU (176 aa)
 
    0.797
Slin_6180
SNF2-like protein (1003 aa)
     
    0.767
Slin_5625
SNF2-like protein (1185 aa)
     
    0.767
Slin_3414
Helicase (1127 aa)
     
    0.767
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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