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Slin_5923 protein (Spirosoma linguale) - STRING interaction network
"Slin_5923" - Hypothetical protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5923Hypothetical protein (461 aa)    
Predicted Functional Partners:
Slin_5922
Hypothetical protein (199 aa)
              0.864
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) (390 aa)
              0.859
Slin_5924
GH3 auxin-responsive promoter (500 aa)
              0.824
Slin_4534
TonB-dependent receptor (779 aa)
   
          0.758
Slin_3058
Hypothetical protein (289 aa)
   
          0.715
Slin_3057
Hypothetical protein (285 aa)
   
          0.712
Slin_1093
Hypothetical protein (650 aa)
   
          0.660
Slin_3163
Nucleotidyltransferase (356 aa)
   
          0.628
Slin_5144
Hypothetical protein (267 aa)
   
          0.626
Slin_3646
N-acetyltransferase GCN5 (168 aa)
   
          0.616
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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