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Slin_5926 protein (Spirosoma linguale) - STRING interaction network
"Slin_5926" - Rod shape-determining protein MreC in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5926Rod shape-determining protein MreC (278 aa)    
Predicted Functional Partners:
Slin_5925
MreB/Mrl family cell shape determining protein (341 aa)
 
 
  0.991
Slin_3201
Cell cycle protein (426 aa)
 
 
  0.833
Slin_3202
Peptidoglycan glycosyltransferase (654 aa)
 
   
  0.817
Slin_5927
Hypothetical protein (168 aa)
 
          0.778
Slin_5928
GAF domain-containing protein (160 aa)
              0.658
Slin_4751
Cell cycle protein (373 aa)
 
 
  0.624
Slin_4738
Peptidoglycan glycosyltransferase (709 aa)
 
   
  0.609
Slin_3220
Glycosyl transferase family protein (785 aa)
   
 
 
  0.606
Slin_0294
Protein PASTA domain-containing protein (258 aa)
   
          0.592
Slin_5169
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA (1029 aa)
 
   
  0.561
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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