STRINGSTRING
Slin_5942 protein (Spirosoma linguale) - STRING interaction network
"Slin_5942" - Exonuclease RNase T and DNA polymerase III in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5942Exonuclease RNase T and DNA polymerase III (270 aa)    
Predicted Functional Partners:
Slin_0531
DNA polymerase III subunit alpha (1205 aa)
   
  0.990
Slin_4880
DNA polymerase III subunit beta; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (379 aa)
     
  0.989
Slin_6089
DNA polymerase III gamma/tau subunits-like protein (371 aa)
     
  0.955
Slin_0023
DNA polymerase III subunits gamma and tau (664 aa)
     
  0.955
Slin_5691
DEAD/DEAH box helicase (475 aa)
     
  0.945
Slin_3331
DEAD/DEAH box helicase (441 aa)
     
  0.945
Slin_3330
DEAD/DEAH box helicase (447 aa)
     
  0.945
Slin_3329
DEAD/DEAH box helicase (380 aa)
     
  0.945
Slin_2449
DEAD/DEAH box helicase (485 aa)
     
  0.945
Slin_1766
DEAD/DEAH box helicase (535 aa)
     
  0.945
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (10%) [HD]