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Slin_5961 protein (Spirosoma linguale) - STRING interaction network
"Slin_5961" - ECF subfamily RNA polymerase sigma-24 subunit in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5961ECF subfamily RNA polymerase sigma-24 subunit (171 aa)    
Predicted Functional Partners:
Slin_5489
ECF subfamily RNA polymerase sigma-24 subunit (189 aa)
   
          0.750
Slin_5681
ECF subfamily RNA polymerase sigma-24 subunit (199 aa)
   
          0.743
Slin_0974
ECF subfamily RNA polymerase sigma-24 subunit (190 aa)
   
          0.739
Slin_5141
ECF subfamily RNA polymerase sigma-24 subunit (196 aa)
   
          0.731
Slin_4632
ECF subfamily RNA polymerase sigma-24 subunit (181 aa)
   
          0.699
Slin_5603
ECF subfamily RNA polymerase sigma-24 subunit (195 aa)
   
          0.697
Slin_4422
ECF subfamily RNA polymerase sigma-24 subunit (183 aa)
   
          0.675
Slin_6312
ECF subfamily RNA polymerase sigma-24 subunit (162 aa)
   
          0.650
Slin_0072
ECF subfamily RNA polymerase sigma-24 subunit (154 aa)
   
          0.649
Slin_1288
ECF subfamily RNA polymerase sigma-24 subunit (183 aa)
   
          0.634
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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