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Slin_5982 protein (Spirosoma linguale) - STRING interaction network
"Slin_5982" - Histone family protein DNA-binding protein in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5982Histone family protein DNA-binding protein (100 aa)    
Predicted Functional Partners:
Slin_5981
Hypothetical protein (298 aa)
              0.798
Slin_5984
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism (171 aa)
   
 
  0.755
pheT
phenylalanyl-tRNA synthetase subunit beta (814 aa)
   
 
  0.744
Slin_5983
A/G-specific adenine glycosylase (362 aa)
         
  0.733
Slin_5663
RNA binding S1 domain-containing protein (595 aa)
 
 
  0.680
Slin_5985
Gliding motility-associated protein GldE (453 aa)
         
  0.615
Slin_0543
DNA polymerase I (1024 aa)
     
 
  0.589
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (682 aa)
   
 
  0.554
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (894 aa)
   
 
  0.521
Slin_4360
Polysaccharide biosynthesis protein (429 aa)
 
          0.519
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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