STRINGSTRING
Slin_5998 protein (Spirosoma linguale) - STRING interaction network
"Slin_5998" - Oxidoreductase domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5998Oxidoreductase domain-containing protein (321 aa)    
Predicted Functional Partners:
Slin_5997
Hypothetical protein (283 aa)
              0.633
Slin_6351
Xylose isomerase (279 aa)
   
   
  0.610
Slin_5789
Xylose isomerase (285 aa)
   
   
  0.610
Slin_3491
Xylose isomerase (281 aa)
   
   
  0.610
Slin_3432
Xylose isomerase (350 aa)
   
   
  0.610
Slin_3337
Xylose isomerase (287 aa)
   
   
  0.610
Slin_2652
Xylose isomerase (283 aa)
   
   
  0.610
Slin_1892
Xylose isomerase (296 aa)
   
   
  0.610
Slin_1842
Xylose isomerase (287 aa)
   
   
  0.610
Slin_1263
Xylose isomerase (297 aa)
   
   
  0.610
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (10%) [HD]